Visualize the graph

Now that we've thought a bit about how we constructed our network, let's size our graph and make an initial visualization. Before you make the plot, you'll calculate the number of vertices and edges. This allows you to know if you can actually plot the entire network. Also, the ratio of nodes to edges will give you an intuition of just how dense or sparse your plot might be. As you create your plot, take a moment to hypothesize what you think the plot will look like based on these metrics.

Deze oefening maakt deel uit van de cursus

Case Studies: Network Analysis in R

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Oefeninstructies

Calculate the number of nodes of the graph retweet_graph using gorder().
Calculate the number of edges of the graph retweet_graph using gsize().
Calculate graph density of the graph retweet_graph using graph.density().
Plot the retweet network retweet_graph.

Praktische interactieve oefening

Probeer deze oefening eens door deze voorbeeldcode in te vullen.

# Count the number of nodes in retweet_graph
___

# Count the number of edges in retweet_graph
___

# Calculate the graph density of retweet_graph
___

# Plot retweet_graph
plot(___)

Code bewerken en uitvoeren

Deze oefening maakt deel uit van de cursus

Case Studies: Network Analysis in R

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In this chapter you'll explore a subset of an Amazon purchase graph. You'll build on what you've already learned, finding important products and discovering what drives purchases. You'll also examine how graphs can change through time by looking at the graph during different time periods.

Exercise 1: Exploring your data set Exercise 2: Finding Dyads and Triads Exercise 3: Clustering and Reciprocity Exercise 4: Important Products Exercise 5: What Makes an Important Product?Exercise 6: Exploring temporal structure Exercise 7: Metrics through time Exercise 8: Plotting Metrics Over Time

In this lesson you'll explore some Twitter data about R by looking at conversations using '#rstats'. First you'll look at the raw data and think about how you want to build your graph. There's a number of ways to do this, and we'll cover two ways: retweets and mentions. You'll build those graphs and then compare them on a number of metrics.

Exercise 1: Creating your retweet graph Exercise 2: Visualize the graph

Huidige oefening

Exercise 3: Visualize nodes by degree Exercise 4: What's the distribution of centrality?Exercise 5: Who is important in the conversation?Exercise 6: Plotting important vertices Exercise 7: Building a mentions graph Exercise 8: Comparing mention and retweet graph Exercise 9: Assortativity and reciprocity Exercise 10: Finding who is talking to whom Exercise 11: Finding communities Exercise 12: Comparing community algorithms Exercise 13: Visualizing the communities

In this chapter you will analyze data from a Chicago bike sharing network. We will build on the concepts already covered in the introductory course, and add a few new ones to handle graphs with weighted edges. You will also start with data in a slightly more raw form and cover how to build your graph up from a data source you might find.

Exercise 1: Creating our graph from raw data Exercise 2: Making Graphs of Different User Types Exercise 3: Compare Graphs of Different User Types Exercise 4: Compare graph distance vs. geographic distance Exercise 5: Compare Subscriber vs. Non-Subscriber Distances Exercise 6: Most Traveled To and From Stations Exercise 7: Most Traveled To and From Stations with Weights Exercise 8: Visualize central vertices Exercise 9: Weighted Measures of Centrality Exercise 10: Connectivity Exercise 11: Find the minimum cut 1 Exercise 12: Find the minimum cut 2 Exercise 13: Unweighted Clustering Randomizations Exercise 14: Weighted Clustering Randomizations

So far everything we've done has been using plotting from igraph. It provides many powerful ways to plot your graph data. However many people prefer interacting with other plotting frameworks like ggplot2, or even interactive frameworks like d3.js. In this lesson you'll look at other plotting libraries that build on the ggplot2 framework. You'll also look at other non-"hairball" type methods like hive plots, as well as building interactive and animated plots.

Exercise 1: Other packages for plotting graphs!Exercise 2: ggnet Basics Exercise 3: ggnetwork Basics Exercise 4: More ggnet Plotting Options Exercise 5: More ggnetwork Plotting Options Exercise 6: Interactive visualizations Exercise 7: Interactive plots with ggiraph Exercise 8: Interactive javascript plots Exercise 9: Alternative visualizations Exercise 10: Alternative ways to visualize a graph: Hive plots Exercise 11: BioFabric as an HTML widget Exercise 12: Plotting graphs on a map