DESeq2 significant results
NOTE: It may take a bit longer to load this exercise.
Now let's extract the significant results! Assume that we have the extracted results from the previous exercise, smoc2_res
.
This exercise is part of the course
RNA-Seq with Bioconductor in R
Exercise instructions
Save the results,
smoc2_res
, as a data frame using thedata.frame()
function on the results object.Extract the significant genes with p-adjusted values less than 0.05 (the alpha value) using the
subset()
function.
Hands-on interactive exercise
Have a go at this exercise by completing this sample code.
# Save results as a data frame
smoc2_res_all <- ___(___)
# Subset the results to only return the significant genes with p-adjusted values less than 0.05
smoc2_res_sig <- ___(___, ___ < ___)