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Exercise

Nested experiment design

In order to further explore the mouse epithelium dataset, you will look at the batches in which each cell has been sequenced. Is there a correlation between the batches and clusters found in the published paper?

Instructions
100 XP
  • Extract the data frame with information about the cells and assign it to cData. Print the column names of the object cData.

  • Subset cData to keep only columns Batch and publishedClusters and assign it back to cData.

  • Tabulate cData using the function table().