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Exercise

Normalize SCE object

Recall that normalization can help us to remove technical artifacts. In this exercise, you will compute normalized log counts using the normalization method normalize() from the package scater. You can check out the documentation for normalize() here.

Instructions
100 XP
  • Find the available assays for sce.

  • Compute the normalized log counts using the function normalize() and assign the result to normalized_sce.

  • Examine assays for normalized_sce to see the new assay of normalized logcounts.