Visualizing Univariate Gaussian Mixture Model

Since you fitted the model into fit_mix_example and extracted the parameters into comp_1, comp_2 and comp_3 (as well as the proportions), let's now plot the corresponding clusters with the density histogram.

To facilitate this last purpose, the fun_prop() function has been defined in the environment. This function provides the density values for a Gaussian distribution, like dnorm, but is extended to also accept the proportions.

This exercise is part of the course

Mixture Models in R

Exercise instructions

Plot the density histogram together with the density of each cluster. Remember that the data frame is called mix_example.
Use the function stat_function() with the argument fun equals fun_prop to draw the density distribution for each cluster.

Hands-on interactive exercise

Have a go at this exercise by completing this sample code.

ggplot(___) + ___(aes(x = x, y = ..density..)) + 
  stat_function(geom = "line", fun = fun_prop, 
                args = list(mean = ___[1], sd = ___[2], 
                proportion = proportions[1])) +
  stat_function(geom = "line", fun = fun_prop, 
                args = list(mean = comp_2[1], sd = comp_2[2], 
                proportion = ___[2]))+
  stat_function(geom = "line", fun = ___, 
                args = list(mean = comp_3[1], sd = comp_3[2], 
                proportion = proportions[3]))

Edit and Run Code

This exercise is part of the course

Mixture Models in R

IntermediateSkill Level

4.8+

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In this chapter, you will be introduced to fundamental concepts in model-based clustering and how this approach differs from other clustering techniques. You will learn the generating process of Gaussian Mixture Models as well as how to visualize the clusters.

Exercise 1: Introduction to model-based clustering Exercise 2: Clustering approaches Exercise 3: Explore gender data Exercise 4: Gaussian distribution Exercise 5: Sampling a Gaussian distribution Exercise 6: (not so good) Estimations of the mean and sd Exercise 7: Gaussian mixture models (GMM)Exercise 8: Simulate a mixture of two Gaussian distributions Exercise 9: Plot histogram of Gaussian Mixture Exercise 10: Mixture of three Gaussian distributions

In this chapter, you will be introduced to the main structure of Mixture Models, how to address different data with this approach and how to estimate the parameters involved. To accomplish the estimation, you will learn an iterative method called Expectation-Maximization algorithm.

Exercise 1: Structure of mixture models Exercise 2: Which probability distribution?Exercise 3: Handwritten digits dataset Exercise 4: Parameters estimation Exercise 5: Estimation given the probabilities Exercise 6: Calculating the probabilities Exercise 7: EM algorithm Exercise 8: Expectation function Exercise 9: Maximization function Exercise 10: Apply the two steps Exercise 11: Plot the estimated clusters

This chapter shows how to fit Gaussian Mixture Models in 1 and 2 dimensions with `flexmix` package. The data used is formed by 10.000 observations of people with their weight, height, body mass index and informed gender.

Exercise 1: Univariate Gaussian Mixture Models Exercise 2: Number of clusters Exercise 3: Number of parameters Exercise 4: Univariate Gaussian Mixture Models with flexmix Exercise 5: Univariate case with flexmix Exercise 6: Extracting Parameters for Univariate Case Exercise 7: Visualizing Univariate Gaussian Mixture Model

Current Exercise

Exercise 8: Compare the results Exercise 9: Bivariate Gaussian Mixture Models Exercise 10: Cross-term from covariance matrix Exercise 11: Parameters in the bivariate case Exercise 12: Bivariate Gaussian Mixture Models with flexmix Exercise 13: Fit the model with cross-terms Exercise 14: Get the components Exercise 15: Create the ellipses Exercise 16: Visualize the clusters

In this module, you will learn how Mixture Models extends to consider probability distributions different from the Gaussian and how these models are fitted with `flexmix`. The datasets used are handwritten digits images and the number of crimes in Chicago city. For the first dataset you will find clusters that summarize the handwritten digits and for the second dataset, you will find clusters of communities where is more or less dangerous to live in.

Exercise 1: Bernoulli Mixture Models Exercise 2: Binary images Exercise 3: How many values?Exercise 4: Bernoulli Mixture Models with flexmix Exercise 5: Handwritten digits with `flexmix`Exercise 6: Poisson Mixture Models Exercise 7: Discover the lambda Exercise 8: Sample from Poisson distribution Exercise 9: Poisson Mixture Models with flexmix Exercise 10: Crimes data with `flexmix`