Exercise

Reading in files

From the video, you've learned the difference between fasta and fastq files, and what information can be stored in those files.

You have also seen examples of reading fasta and fastq files with their respective functions. You have learned that readFasta() and readFastq() need both a location and a file pattern to read one or many files.

Which two arguments are particular to the function readFastq() from the package ShortRead?

Instructions

50 XP

Possible answers

pattern and dirPath

filter and dirPath

qualityType and filter

pattern and filter