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  3. Introduction to Bioconductor in R

Exercise

Looking for a match

From the previous exercise, you have two objects: selectedSet(a set) and selectedSeq (a single sequence).

You have recently discovered that pattern ns5 is on frame 3 of the AAzika6F. Now, you will discover what the match looks like using selectedSet and selectedSeq.

Instructions 1/2

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  • 1
    • Use vmatchPattern() on the appropriate set and allow max.mismatch = 15.
  • 2
    • Use matchPattern() on the appropriate single sequence and allow max.mismatch = 15.