Introduction to ChIP-seq experiments. Why are they interesting? What sort of phenomena can be studied with ChIP-seq and what can we learn from these experiments.
Now the ChIP-seq analysis begins in earnest. This chapter introduces Bioconductor tools to import and clean the data.
This chapter introduces techniques to identify and visualise differences between ChIP-seq samples.
Being able to identify differential binding between groups of samples is great, but what does it mean? This chapter discusses strategies to interpret differential binding results to go from peak calls to biologically meaningful insights.